Project Info
Emergent topological complexity in neuroscience data
Lincoln Carr
lcarr@mines.edu
Project Goals and Description:
This project examines data structures found common to AI/ML, quantum information, and neuroscience. It is the first use of emergent topological complexity methods on neuroscience data, and they have already proven highly effective in AI/ML. The goal is to identify information carrying object in the higher dimensional spaces of the correlations in these systems. We have 4 data sets from 4 separate experiments we are working with currently.
More Information:
Grand Challenge: Reverse-engineer the brain.
There are many papers in ML/AI on this subject. Here is one from our collaborator Nina Miolane.
Auteurs
Guillermo Bernárdez, Miquel Ferriol-Galmés, Carlos Güemes-Palau, Mathilde Papillon, Pere Barlet-Ros, Albert Cabellos-Aparicio, Nina Miolane
Date de publication
2025/3/20
Revue
arXiv preprint arXiv:2503.16746
Description
Computer networks are the foundation of modern digital infrastructure, facilitating global communication and data exchange. As demand for reliable high-bandwidth connectivity grows, advanced network modeling techniques become increasingly essential to optimize performance and predict network behavior. Traditional modeling methods, such as packet-level simulators and queueing theory, have notable limitations --either being computationally expensive or relying on restrictive assumptions that reduce accuracy. In this context, the deep learning-based RouteNet family of models has recently redefined network modeling by showing an unprecedented cost-performance trade-off. In this work, we revisit RouteNet's sophisticated design and uncover its hidden connection to Topological Deep Learning (TDL), an emerging field that models higher-order interactions beyond standard graph-based methods. We demonstrate that, although originally formulated as a heterogeneous Graph Neural Network, RouteNet serves as the first instantiation of a new form of TDL. More specifically, this paper presents OrdGCCN, a novel TDL framework that introduces the notion of ordered neighbors in arbitrary discrete topological spaces, and shows that RouteNet's architecture can be naturally described as an ordered topological neural network. To the best of our knowledge, this marks the first successful real-world application of state-of-the-art TDL principles --which we confirm through extensive testbed experiments--, laying the foundation for the next generation of ordered TDL-driven applications.
Primary Contacts:
Lincoln Carr, lcarr@mines.edu
Student Preparation
Qualifications
Programming skills, willingness to learn and adapt.
TIME COMMITMENT (HRS/WK)
5-10
SKILLS/TECHNIQUES GAINED
Data analysis tools, specifically Vietoris-Rips filtration. An understanding of the role of higher order correlators in brain function. Familiarity with neuroscience data.
MENTORING PLAN
One on one weekly meetings with me, working with my team of four students.
Preferred Student Status
Sophomore
Junior
Senior